6PGP
Target information
- RCSB PDB
- 6PGP
- Title
- Crystal structure of human KRAS G12C covalently bound to a quinazolinone inhibitor
- Method
- X-RAY DIFFRACTION
- Resolution
- 1.5
- Classification
- SIGNALING PROTEIN/Inhibitor
- Organism
- Homo sapiens
- Protein
- GTPase KRas (P01116)    Looking for covalent inhibitors of this target ?
- Year
- 2019
- Publication Title
- Discovery of a Covalent Inhibitor of KRASG12C(AMG 510) for the Treatment of Solid Tumors.
- Abstract
-
KRAS G12C has emerged as a promising target in the treatment of solid tumors. Covalent inhibitors targeting the mutant cysteine-12 residue have been shown to disrupt signaling by this long-'undruggable' target; however clinically viable inhibitors have yet to be identified. Here, we report efforts to exploit a cryptic pocket (H95/Y96/Q99) we identified in KRAS G12C to identify inhibitors suitable for clinical development. Structure-based design efforts leading to the identification of a novel quinazolinone scaffold are described, along with optimization efforts that overcame a configurational stability issue arising from restricted rotation about an axially chiral biaryl bond. Biopharmaceutical optimization of the resulting leads culminated in the identification of AMG 510, a highly potent, selective, and well-tolerated KRAS G12C inhibitor currently in phase I clinical trials (NCT03600883).
- External Link
- RCSB PDB
Ligand information
- HET
- OHY
- Chain ID
- A
- HET Number
- 504
- Molecular Formula
- C30H28ClFN4O3
- Structure
-
- IUPAC Name
- 6-chloro-7-(2-fluoro-6-hydroxy-phenyl)-1-(2-isopropylphenyl)-4-(4-prop-2-enoylpiperazin-1-yl)quinazolin-2-one
- InChI
- InChI=1S/C30H28ClFN4O3/c1-4-27(38)34-12-14-35(15-13-34)29-21-16-22(31)20(28-23(32)9-7-11-26(28)37)17-25(21)36(30(39)33-29)24-10-6-5-8-19(24)18(2)3/h4-11,16-18,37H,1,12-15H2,2-3H3
- InChI Key
- AFCLJUXYULJJII-UHFFFAOYSA-N
- Canonical SMILES
- Fc1cccc(O)c1-c(c2)c(Cl)cc(c23)c(N4CCN(CC4)C(=O)C=C)nc(=O)n3-c5ccccc5C(C)C
- Bioactivity data
- CI004720
Covalent Binding
- Warhead
- Michael Acceptor
- Reaction Mechanism
- Michael Addition
- Residue
- CYS : 12
- Residue Chain
- A
- Interactions
- Pharmacophore Model