6PGP

Target information

RCSB PDB
6PGP
Title
Crystal structure of human KRAS G12C covalently bound to a quinazolinone inhibitor
Method
X-RAY DIFFRACTION
Resolution
1.5
Classification
SIGNALING PROTEIN/Inhibitor
Organism
Homo sapiens
Protein
GTPase KRas (P01116)    Looking for covalent inhibitors of this target ?
Year
2019
Publication Title
Discovery of a Covalent Inhibitor of KRASG12C(AMG 510) for the Treatment of Solid Tumors.
Abstract

KRAS G12C has emerged as a promising target in the treatment of solid tumors. Covalent inhibitors targeting the mutant cysteine-12 residue have been shown to disrupt signaling by this long-'undruggable' target; however clinically viable inhibitors have yet to be identified. Here, we report efforts to exploit a cryptic pocket (H95/Y96/Q99) we identified in KRAS G12C to identify inhibitors suitable for clinical development. Structure-based design efforts leading to the identification of a novel quinazolinone scaffold are described, along with optimization efforts that overcame a configurational stability issue arising from restricted rotation about an axially chiral biaryl bond. Biopharmaceutical optimization of the resulting leads culminated in the identification of AMG 510, a highly potent, selective, and well-tolerated KRAS G12C inhibitor currently in phase I clinical trials (NCT03600883).

External Link
RCSB PDB





Ligand information

HET
OHY
Chain ID
A
HET Number
504
Molecular Formula
C30H28ClFN4O3
Structure
2D structure
IUPAC Name
6-chloro-7-(2-fluoro-6-hydroxy-phenyl)-1-(2-isopropylphenyl)-4-(4-prop-2-enoylpiperazin-1-yl)quinazolin-2-one
InChI
InChI=1S/C30H28ClFN4O3/c1-4-27(38)34-12-14-35(15-13-34)29-21-16-22(31)20(28-23(32)9-7-11-26(28)37)17-25(21)36(30(39)33-29)24-10-6-5-8-19(24)18(2)3/h4-11,16-18,37H,1,12-15H2,2-3H3
InChI Key
AFCLJUXYULJJII-UHFFFAOYSA-N
Canonical SMILES
Fc1cccc(O)c1-c(c2)c(Cl)cc(c23)c(N4CCN(CC4)C(=O)C=C)nc(=O)n3-c5ccccc5C(C)C
Bioactivity data
CI004720

Covalent Binding

Warhead
Michael Acceptor
Reaction Mechanism
Michael Addition
Residue
CYS : 12
Residue Chain
A
Interactions
Pharmacophore Model