5FSE
Target information
- RCSB PDB
- 5FSE
- Title
- 2.07 A resolution 1,4-Benzoquinone inhibited Sporosarcina pasteurii urease
- Method
- X-RAY DIFFRACTION
- Resolution
- 2.07
- Classification
- HYDROLASE
- Organism
- Sporosarcina pasteurii
- Protein
- Urease subunit gamma (P41022)
- Year
- 2016
- Publication Title
- Inactivation of Urease by 1,4-Benzoquinone: Chemistry at the Protein Surface.
- Abstract
-
The high activity of urease, a Ni(ii) enzyme, has several adverse effects on human health and agriculture, and its modulation needs the use of inhibitors. 1,4-Benzoquinone (BQ) irreversibly inactivates Sporosarcina pasteurii urease (SPU), with first order kinetics for both the inhibitor and the enzyme. This reaction is stoichiometrically quenched in the presence of sulphite. The 2.07 crystal structure of SPU bound to BQ shows the presence of a 1,4-hydroquinone moiety covalently bound to the thiol group of ??Cys322, a key residue found on the mobile flap regulating the substrate access to the active site. The 1.75 crystal structure obtained when sulphite is added to a solution of SPU previously incubated with BQ shows the presence of a 2,5-dihydroxy-benzenesulphonate moiety bound to the ??Cys322 thiol group. These data reveal how the active site cysteine reacts with a prototypical BQ moiety, found in a large number of natural substances potentially suitable to control the urease activity.
- External Link
- RCSB PDB
Ligand information
- HET
- HQE
- Chain ID
- C
- HET Number
- 1583
- Molecular Formula
- C6H4O2
- Structure
-
- IUPAC Name
- 1,4-benzoquinone
- InChI
- InChI=1S/C6H4O2/c7-5-1-2-6(8)4-3-5/h1-4H
- InChI Key
- AZQWKYJCGOJGHM-UHFFFAOYSA-N
- Canonical SMILES
- O=C1C=CC(=O)C=C1
- Bioactivity data
- CI000008
Covalent Binding
- Warhead
- Michael Acceptor
- Reaction Mechanism
- Michael Addition
- Residue
- CYS : 555
- Residue Chain
- C
- Interactions
- Pharmacophore Model