3WNR

Target information

RCSB PDB
3WNR
Title
Multiple binding modes of benzyl isothiocyanate inhibitor complexed with Macrophage Migration Inhibitory Factor
Method
X-RAY DIFFRACTION
Resolution
2.01
Classification
ISOMERASE/ISOMERASE INHIBITOR
Organism
Homo sapiens
Protein
Macrophage migration inhibitory factor (P14174)    Looking for covalent inhibitors of this target ?
Year
2013
Publication Title
Multiple binding modes of isothiocyanates that inhibit macrophage migration inhibitory factor
Abstract

Macrophage migration inhibitory factor (MIF) is a pleiotropic cytokine that has roles in the innate immune response, and also contributes to inflammatory disease. While the biological properties of MIF are closely linked to protein-protein interactions, MIF also has tautomerase activity. Inhibition of this activity interferes with the interaction of MIF with protein partners e.g. the CD74 receptor, and tautomerase inhibitors show promise in disease models including multiple sclerosis and colitis. Isothiocyanates inhibit MIF tautomerase activity via covalent modification of the N-terminal proline. We systematically explored variants of benzyl and phenethyl isothiocyanates, to define determinants of inhibition. In particular, substitution with hydroxyl, chloro, fluoro and trifluoro moieties at the para and meta positions were evaluated. In assays on treated cells and recombinant protein, the IC50 varied from 250?nM to >100???M. X-ray crystal structures of selected complexes revealed that two binding modes are accessed by some compounds, perhaps owing to strain in short linkers between the isothiocyanate and aromatic ring. The variety of binding modes confirms the existence of two subsites for inhibitors and establishes a platform for the development of potent inhibitors of MIF that only need to target one of these subsites.

External Link
RCSB PDB





Ligand information

HET
9BE
Chain ID
A
HET Number
201
Molecular Formula
C8H7NS
Structure
2D structure
IUPAC Name
isothiocyanatomethylbenzene
InChI
InChI=1S/C8H7NS/c10-7-9-6-8-4-2-1-3-5-8/h1-5H,6H2
InChI Key
MDKCFLQDBWCQCV-UHFFFAOYSA-N
Canonical SMILES
S=C=NCc1ccccc1
Bioactivity data
CI000004

Covalent Binding

Warhead
Isothiocyanate
Reaction Mechanism
Nucleophilic Addition
Residue
PRO : 2
Residue Chain
A
Interactions
Pharmacophore Model