3WNR
Target information
- RCSB PDB
- 3WNR
- Title
- Multiple binding modes of benzyl isothiocyanate inhibitor complexed with Macrophage Migration Inhibitory Factor
- Method
- X-RAY DIFFRACTION
- Resolution
- 2.01
- Classification
- ISOMERASE/ISOMERASE INHIBITOR
- Organism
- Homo sapiens
- Protein
- Macrophage migration inhibitory factor (P14174)    Looking for covalent inhibitors of this target ?
- Year
- 2013
- Publication Title
- Multiple binding modes of isothiocyanates that inhibit macrophage migration inhibitory factor
- Abstract
-
Macrophage migration inhibitory factor (MIF) is a pleiotropic cytokine that has roles in the innate immune response, and also contributes to inflammatory disease. While the biological properties of MIF are closely linked to protein-protein interactions, MIF also has tautomerase activity. Inhibition of this activity interferes with the interaction of MIF with protein partners e.g. the CD74 receptor, and tautomerase inhibitors show promise in disease models including multiple sclerosis and colitis. Isothiocyanates inhibit MIF tautomerase activity via covalent modification of the N-terminal proline. We systematically explored variants of benzyl and phenethyl isothiocyanates, to define determinants of inhibition. In particular, substitution with hydroxyl, chloro, fluoro and trifluoro moieties at the para and meta positions were evaluated. In assays on treated cells and recombinant protein, the IC50 varied from 250?nM to >100???M. X-ray crystal structures of selected complexes revealed that two binding modes are accessed by some compounds, perhaps owing to strain in short linkers between the isothiocyanate and aromatic ring. The variety of binding modes confirms the existence of two subsites for inhibitors and establishes a platform for the development of potent inhibitors of MIF that only need to target one of these subsites.
- External Link
- RCSB PDB
Ligand information
- HET
- 9BE
- Chain ID
- A
- HET Number
- 201
- Molecular Formula
- C8H7NS
- Structure
-
- IUPAC Name
- isothiocyanatomethylbenzene
- InChI
- InChI=1S/C8H7NS/c10-7-9-6-8-4-2-1-3-5-8/h1-5H,6H2
- InChI Key
- MDKCFLQDBWCQCV-UHFFFAOYSA-N
- Canonical SMILES
- S=C=NCc1ccccc1
- Bioactivity data
- CI000004
Covalent Binding
- Warhead
- Isothiocyanate
- Reaction Mechanism
- Nucleophilic Addition
- Residue
- PRO : 2
- Residue Chain
- A
- Interactions
- Pharmacophore Model