3DY3
Target information
- RCSB PDB
- 3DY3
- Title
- Crystal structure of yeast 20S proteasome in complex with the epimer form of spirolactacystin
- Method
- X-RAY DIFFRACTION
- Resolution
- 2.81
- Classification
- HYDROLASE
- Organism
- Saccharomyces cerevisiae
- Protein
- Proteasome subunit beta type-5 (P30656)    Looking for covalent inhibitors of this target ?
- Year
- 2008
- Publication Title
- Structural analysis of spiro beta-lactone proteasome inhibitors.
- Abstract
-
Spiro beta-lactone-based proteasome inhibitors were discovered in the context of an asymmetric catalytic total synthesis of the natural product (+)-lactacystin (1). Lactone 4 was found to be a potent inhibitor of the 26S proteasome, while its C-6 epimer (5) displayed weak activity. Crystallographic studies of the two analogues covalently bound to the 20S proteasome permitted characterization of the important stabilizing interactions between each inhibitor and the proteasome's key catalytic N-terminal threonine residue. This structural data support the hypothesis that the discrepancy in potency between 4 and 5 may be due to differences in the hydrolytic stabilities of the resulting acyl enzyme complexes.
- External Link
- RCSB PDB
Ligand information
- HET
- SLR
- Chain ID
- K
- HET Number
- 301
- Molecular Formula
- C10H15NO4
- Structure
-
- IUPAC Name
- (1S,4S,7R,8R)-8-hydroxy-1-isopropyl-7-methyl-2-oxa-5-azaspiro[3.4]octane-3,6-dione
- InChI
- InChI=1S/C10H15NO4/c1-4(2)7-10(9(14)15-7)6(12)5(3)8(13)11-10/h4-7,12H,1-3H3,(H,11,13)/t5-,6-,7+,10+/m1/s1
- InChI Key
- RLRXWEKMKZQTGF-JQCUSGDOSA-N
- Canonical SMILES
- CC(C)[C@@H]1OC(=O)[C@@]12NC(=O)[C@H](C)[C@H]2O
- Bioactivity data
- No bioactivity data available for this ligand.
Covalent Binding
- Warhead
- Lactone
- Reaction Mechanism
- Ring-opening
- Residue
- THR : 1
- Residue Chain
- K
- Interactions
- Pharmacophore Model