Compound information

Natural Products
ZC315543
Molecular Formula
C13H14N2O2S
Molecular Weight
262.077598688 g/mol
Structure
IUPAC Name
1-[[(2S)-oxiran-2-yl]methyl]-3-[[(2S)-thiiran-2-yl]methyl]benzimidazol-2-one
InChI
InChI=1S/C13H14N2O2S/c16-13-14(5-9-7-17-9)11-3-1-2-4-12(11)15(13)6-10-8-18-10/h1-4,9-10H,5-8H2/t9-,10-/m0/s1
InChI Key
PVNJZTPYXVENIB-UWVGGRQHSA-N
SMILES
O=c1n(C[C@H]2CO2)c2ccccc2n1C[C@H]1CS1
Source
ZINC000004792591

Warheads

Epoxide


ADMET Property

Physicochemical Property

Property Value Property Value
Heavy Atom Count 18 Ring Count 4
Heteroatom Count 5 Rotatable Bond Count 4
Hydrogen Bond Acceptor Count 5 Hydrogen Bond Donor Count 0
Topological Polar Surface Area 39.46 Å2 LogP 2.346
LogS -3.614 LogD 2.107


Absorption

Property Value Property Value
Pgp inhibitor 0.171 Pgp substrate 0.006
HIA 0.962 F20 % 0.745
F30 % 0.899 Caco-2 -4.367
MDCK -4.718


Distribution

Property Value Property Value
BBB Penetration 0.997 PPB 64.181
VD 1.375 Fu 0.671


Metabolism

Property Value Property Value
CYP1A2 inhibitor 0.985 CYP1A2 substrate 0.666
CYP2A6 substrate 0.785 CYP2B6 substrate 0.549
CYP2C19 inhibitor 0.393 CYP2C19 substrate 0.777
CYP2C8 substrate 0.604 CYP2C9 inhibitor 0.066
CYP2C9 substrate 1.0 CYP2D6 inhibitor 0.094
CYP2D6 substrate 0.942 CYP2E1 substrate 0.706
CYP3A4 inhibitor 0.544 CYP3A4 substrate 1.0


Excretion

Property Value Property Value
T1/2 0.714 CL 9.034


Toxicity

Property Value Property Value
hERG Blockers 0.318 Hepatotoxicity 0.948
Mutagenicity 0.997 Rat Oral Acute Toxicity 0.671
FDAMDD 0.571 Skin Sensitization 0.873
Carcinogenicity 0.985 Eye Corrosion 0.014
Eye Irritation 0.209 Respiratory Toxicity 0.367


Environmental Toxicity

Property Value Property Value
Bioconcentration Factors 1.287 IGC50 3.589
LC50FM 1.491 LC50DM -0.482


Tox21 Pathway

Property Value Property Value
NR-AR 0.186 NR-AR-LBD 0.798
NR-AhR 0.666 NR-Aromatase 0.209
NR-ER 0.253 NR-ER-LBD 0.458
NR-PPAR-gamma 0.197 SR-ARE 0.103
SR-ATAD5 0.761 SR-HSE 0.687
SR-MMP 0.017 SR-p53 0.735


Similar covalent inhibitors

CI006842

Similarity Score: 0.52



Similar covalent drugs

No similar covalent drugs found for this compound.