6X27

Target information

RCSB PDB
6X27
Title
Lon protease proteolytic domain complexed with bortezomib
Method
X-RAY DIFFRACTION
Resolution
2.12
Classification
HYDROLASE/HYDROLASE inhibitor
Organism
Homo sapiens
Protein
Lon protease homolog, mitochondrial (P36776)
Year
2021
Publication Title
Structure-Based Design of Selective LONP1 Inhibitors for Probing In Vitro Biology.
Abstract

LONP1 is an AAA+ protease that maintains mitochondrial homeostasis by removing damaged or misfolded proteins. Elevated activity and expression of LONP1 promotes cancer cell proliferation and resistance to apoptosis-inducing reagents. Despite the importance of LONP1 in human biology and disease, very few LONP1 inhibitors have been described in the literature. Herein, we report the development of selective boronic acid-based LONP1 inhibitors using structure-based drug design as well as the first structures of human LONP1 bound to various inhibitors. Our efforts led to several nanomolar LONP1 inhibitors with little to no activity against the 20S proteasome that serve as tool compounds to investigate LONP1 biology.

External Link
RCSB PDB





Ligand information

HET
BO2
Chain ID
A
HET Number
1001
Molecular Formula
C19H25BN4O4
Structure
2D structure
IUPAC Name
[(1R)-3-methyl-1-[[(2S)-3-phenyl-2-(pyrazine-2-carbonylamino)propanoyl]amino]butyl]boronic acid
InChI
InChI=1S/C19H25BN4O4/c1-13(2)10-17(20(27)28)24-18(25)15(11-14-6-4-3-5-7-14)23-19(26)16-12-21-8-9-22-16/h3-9,12-13,15,17,27-28H,10-11H2,1-2H3,(H,23,26)(H,24,25)/t15-,17-/m0/s1
InChI Key
GXJABQQUPOEUTA-RDJZCZTQSA-N
Canonical SMILES
CC(C)C[C@H](NC(=O)[C@H](Cc1ccccc1)NC(=O)c1cnccn1)B(O)O
Bioactivity data
CI006008

Covalent Binding

Warhead
Boronic Acid
Reaction Mechanism
Boronic Acid Addition
Residue
SER : 855
Residue Chain
A
Interactions