6N80
Target information
- RCSB PDB
- 6N80
- Title
- S. aureus ClpP bound to anti-4a
- Method
- X-RAY DIFFRACTION
- Resolution
- 1.96
- Classification
- HYDROLASE
- Organism
- Staphylococcus aureus subsp. aureus NCTC 8325
- Protein
- ATP-dependent Clp protease proteolytic subunit (Q2G036)    Looking for covalent inhibitors of this target ?
- Year
- 2018
- Publication Title
- De Novo Design of Boron-Based Peptidomimetics as Potent Inhibitors of Human ClpP in the Presence of Human ClpX.
- Abstract
-
Boronic acids have attracted the attention of synthetic and medicinal chemists due to boron's ability to modulate enzyme function. Recently, we demonstrated that boron-containing amphoteric building blocks facilitate the discovery of bioactive aminoboronic acids. Herein, we have augmented this capability with a de novo library design and a virtual screening platform modified for covalent ligands. This technique has allowed us to rapidly design and identify a series of ??-aminoboronic acids as the first inhibitors of human ClpXP, which is responsible for the degradation of misfolded proteins.
- External Link
- RCSB PDB
Ligand information
- HET
- JT7
- Chain ID
- S
- HET Number
- 301
- Molecular Formula
- C19H30BClN2O5
- Structure
-
- IUPAC Name
- [(1R)-1-[[(2S)-2-[(2-chloro-4-methoxy-benzoyl)amino]-4-methyl-pentanoyl]amino]-3-methyl-butyl]boronic acid
- InChI
- InChI=1S/C19H30BClN2O5/c1-11(2)8-16(19(25)23-17(20(26)27)9-12(3)4)22-18(24)14-7-6-13(28-5)10-15(14)21/h6-7,10-12,16-17,26-27H,8-9H2,1-5H3,(H,22,24)(H,23,25)/t16-,17-/m0/s1
- InChI Key
- IUZAVACFOSUDSF-IRXDYDNUSA-N
- Canonical SMILES
- CC(C)C[C@@H](B(O)O)NC(=O)[C@H](CC(C)C)NC(=O)c1ccc(cc1Cl)OC
- Bioactivity data
- CI005583
Covalent Binding
- Warhead
- Boronic Acid
- Reaction Mechanism
- Boronic Acid Addition
- Residue
- SER : 98
- Residue Chain
- S
- Interactions
- Pharmacophore Model