5LF3

Target information

RCSB PDB
5LF3
Title
Human 20S proteasome complex with Bortezomib at 2.1 Angstrom
Method
X-RAY DIFFRACTION
Resolution
2.1
Classification
HYDROLASE
Organism
Homo sapiens
Protein
Proteasome subunit alpha type-4 (P25789)
Year
2016
Publication Title
The inhibition mechanism of human 20S proteasomes enables next-generation inhibitor design.
Abstract

The proteasome is a validated target for anticancer therapy, and proteasome inhibition is employed in the clinic for the treatment of tumors and hematological malignancies. Here, we describe crystal structures of the native human 20S proteasome and its complexes with inhibitors, which either are drugs approved for cancer treatment or are in clinical trials. The structure of the native human 20S proteasome was determined at an unprecedented resolution of 1.8 angstroms. Additionally, six inhibitor-proteasome complex structures were elucidated at resolutions between 1.9 and 2.1 angstroms. Collectively, the high-resolution structures provide new insights into the catalytic mechanisms of inhibition and necessitate a revised description of the proteasome active site. Knowledge about inhibition mechanisms provides insights into peptide hydrolysis and can guide strategies for the development of next-generation proteasome-based cancer therapeutics.

External Link
RCSB PDB





Ligand information

HET
BO2
Chain ID
V
HET Number
303
Molecular Formula
C19H25BN4O4
Structure
2D structure
IUPAC Name
[(1R)-3-methyl-1-[[(2S)-3-phenyl-2-(pyrazine-2-carbonylamino)propanoyl]amino]butyl]boronic acid
InChI
InChI=1S/C19H25BN4O4/c1-13(2)10-17(20(27)28)24-18(25)15(11-14-6-4-3-5-7-14)23-19(26)16-12-21-8-9-22-16/h3-9,12-13,15,17,27-28H,10-11H2,1-2H3,(H,23,26)(H,24,25)/t15-,17-/m0/s1
InChI Key
GXJABQQUPOEUTA-RDJZCZTQSA-N
Canonical SMILES
c1ccccc1C[C@@H](C(=O)N[C@H](B(O)O)CC(C)C)NC(=O)c2cnccn2
Bioactivity data
CI006008

Covalent Binding

Warhead
Boronic Acid
Reaction Mechanism
Boronic Acid Addition
Residue
THR : 1
Residue Chain
V
Interactions
Pharmacophore Model