5E7R

Target information

RCSB PDB
5E7R
Title
Crystal structure of TL10-81 bound to TAK1-TAB1
Method
X-RAY DIFFRACTION
Resolution
2.11
Classification
TRANSFERASE/TRANSFERASE inhibitor
Organism
Homo sapiens
Protein
Mitogen-activated protein kinase kinase kinase 7 (O43318)    Looking for covalent inhibitors of this target ?
Year
2015
Publication Title
Structure-guided development of covalent TAK1 inhibitors.
Abstract

TAK1 (transforming growth factor-??-activated kinase 1) is an essential intracellular mediator of cytokine and growth factor signaling and a potential therapeutic target for the treatment of immune diseases and cancer. Herein we report development of a series of 2,4-disubstituted pyrimidine covalent TAK1 inhibitors that target Cys174, a residue immediately adjacent to the 'DFG-motif' of the kinase activation loop. Co-crystal structures of TAK1 with candidate compounds enabled iterative rounds of structure-based design and biological testing to arrive at optimized compounds. Lead compounds such as 2 and 10 showed greater than 10-fold biochemical selectivity for TAK1 over the closely related kinases MEK1 and ERK1 which possess an equivalently positioned cysteine residue. These compounds are smaller, more easily synthesized, and exhibit a different spectrum of kinase selectivity relative to previously reported macrocyclic natural product TAK1 inhibitors such as 5Z-7-oxozeanol.

External Link
RCSB PDB





Ligand information

HET
5KW
Chain ID
A
HET Number
601
Molecular Formula
C23H24Cl2N6O2
Structure
2D structure
IUPAC Name
2-chloro-N-[2-[5-chloro-2-[4-(4-methylpiperazin-1-yl)anilino]pyrimidin-4-yl]oxyphenyl]acetamide
InChI
InChI=1S/C23H24Cl2N6O2/c1-30-10-12-31(13-11-30)17-8-6-16(7-9-17)27-23-26-15-18(25)22(29-23)33-20-5-3-2-4-19(20)28-21(32)14-24/h2-9,15H,10-14H2,1H3,(H,28,32)(H,26,27,29)
InChI Key
NQUKOQARFOAHTI-UHFFFAOYSA-N
Canonical SMILES
CN1CCN(CC1)c1ccc(Nc2ncc(Cl)c(Oc3ccccc3NC(=O)CCl)n2)cc1
Bioactivity data
CI001932

Covalent Binding

Warhead
Halohydrocarbon
Reaction Mechanism
Nucleophilic Substitution
Residue
CYS : 174
Residue Chain
A
Interactions
Pharmacophore Model