5E7R
Target information
- RCSB PDB
- 5E7R
- Title
- Crystal structure of TL10-81 bound to TAK1-TAB1
- Method
- X-RAY DIFFRACTION
- Resolution
- 2.11
- Classification
- TRANSFERASE/TRANSFERASE inhibitor
- Organism
- Homo sapiens
- Protein
- Mitogen-activated protein kinase kinase kinase 7 (O43318)    Looking for covalent inhibitors of this target ?
- Year
- 2015
- Publication Title
- Structure-guided development of covalent TAK1 inhibitors.
- Abstract
-
TAK1 (transforming growth factor-??-activated kinase 1) is an essential intracellular mediator of cytokine and growth factor signaling and a potential therapeutic target for the treatment of immune diseases and cancer. Herein we report development of a series of 2,4-disubstituted pyrimidine covalent TAK1 inhibitors that target Cys174, a residue immediately adjacent to the 'DFG-motif' of the kinase activation loop. Co-crystal structures of TAK1 with candidate compounds enabled iterative rounds of structure-based design and biological testing to arrive at optimized compounds. Lead compounds such as 2 and 10 showed greater than 10-fold biochemical selectivity for TAK1 over the closely related kinases MEK1 and ERK1 which possess an equivalently positioned cysteine residue. These compounds are smaller, more easily synthesized, and exhibit a different spectrum of kinase selectivity relative to previously reported macrocyclic natural product TAK1 inhibitors such as 5Z-7-oxozeanol.
- External Link
- RCSB PDB
Ligand information
- HET
- 5KW
- Chain ID
- A
- HET Number
- 601
- Molecular Formula
- C23H24Cl2N6O2
- Structure
-
- IUPAC Name
- 2-chloro-N-[2-[5-chloro-2-[4-(4-methylpiperazin-1-yl)anilino]pyrimidin-4-yl]oxyphenyl]acetamide
- InChI
- InChI=1S/C23H24Cl2N6O2/c1-30-10-12-31(13-11-30)17-8-6-16(7-9-17)27-23-26-15-18(25)22(29-23)33-20-5-3-2-4-19(20)28-21(32)14-24/h2-9,15H,10-14H2,1H3,(H,28,32)(H,26,27,29)
- InChI Key
- NQUKOQARFOAHTI-UHFFFAOYSA-N
- Canonical SMILES
- CN1CCN(CC1)c1ccc(Nc2ncc(Cl)c(Oc3ccccc3NC(=O)CCl)n2)cc1
- Bioactivity data
- CI001932
Covalent Binding
- Warhead
- Halohydrocarbon
- Reaction Mechanism
- Nucleophilic Substitution
- Residue
- CYS : 174
- Residue Chain
- A
- Interactions
- Pharmacophore Model